from obnb.alltypes import Converter
from obnb.data.network.base import BaseNDExData
[docs]class PCNet(BaseNDExData):
"""The PCNet (v1.3) Parsimonious Composite human gene interaction network."""
cx_uuid = "7a686aa6-c494-11ec-b397-0ac135e8bacf"
def __init__(
self,
root: str,
*,
weighted: bool = False,
directed: bool = False,
largest_comp: bool = True,
gene_id_converter: Converter = "HumanEntrez",
**kwargs,
):
"""Initialize the PCNet network data."""
super().__init__(
root,
weighted=weighted,
directed=directed,
largest_comp=largest_comp,
gene_id_converter=gene_id_converter,
cx_kwargs={
"interaction_types": ["neighbor-of"],
"node_id_entry": "n",
"node_id_prefix": None,
},
**kwargs,
)